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62nd ASMS Conference on Mass Spectrometry and Allied Topics Baltimore Maryland, United States June 15 - 19, 2014 |
Galaxy will again have a strong presence at the 2014 ASMS meeting. This year it's in Baltimore, two weeks before GCC2014.
| Day | Time | Location | Presentation | Links |
|---|---|---|---|---|
| Monday | 9:10am - 9:30am | Ballroom III | Novel Galaxy Workflows Combining RNA-seq and Proteomic MS/MS Reveal New Insights into Non-Model Organisms Conrad Bessant, Queen Mary University of London |
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| 10:30am - 1:00pm | Exhibit Hall C-G | MP 033: Community-based Development and Evaluation of Biological Mass Spectrometry Software via the Galaxy Tool Shed Bart Gottschalk, Minnesota Supercomputing Institute |
Poster | |
| MP 049: Characterizing molecular mechanisms of mammalian hibernation via non-model organism quantitative proteogenomics Katie Vermillion, University of Minnesota-Duluth, Duluth, MN |
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| MP 429: Large-Scale Quantitative Proteomic/Metaproteomic Platform Discovers Target Pathways and Promising Biomarkers of COPD-associated Lung Cancer Brian Sandri, University of Minnesota, Minneapolis, MN |
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| 4:10pm - 4:30pm | Ballroom III | Public sharing of complex MS-based qualitative and quantitative proteomic data analysis workflows: adding value to big data repositories Tim Griffin, University of Minnesota |
Slides | |
| Tuesday | 10:30am - 1:00pm | Exhibit Hall C-G | TP 077: Identifying Novel Peptide Sequence Variants from High Throughput RNA-Seq Data Via Flexible Proteomic Database Generation using the Galaxy Framework James Johnson, Minnesota Supercomputing Institute |
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| 12:00-pm - 2:30pm | TP 078: Towards a Novel Unprecedentedly Comprehensive Protein Identification Strategy, Mass Spectrometry and Ribosome Profiling: The Perfect Match Gerben Menschaert, Ghent University, Ghent, Belgium |
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| Wednesday | 5:45pm - 7:00pm | Room 339-340 | Workshop 7: The Galaxy Framework for Biological MS Informatics: Practical Tips for Software Developers and Users Tim Griffin (presiding), University of Minnesota, Minneapolis, MN See below for more information |
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| Thursday | 12:00pm - 2:30pm | Exhibit Hall C-G | ThP 044: Flexible, Accessible and Reproducible Workflows for Tandem Proteogenomic and Metaproteomic Analysis using the Galaxy-P Platform Pratik Jagtap, Center for Mass Spectrometry, St. Paul, MN |
Poster |
Workshop 7: The Galaxy Framework for Biological MS Informatics: Practical Tips for Software Developers and Users
Wednesday, 5:45-7:00 PM, Room 339-340.
Tim Griffin (presiding), University of Minnesota
The open source Galaxy software framework is gaining momentum as a tool to solve biological MS informatics problems. It offers unique features such as flexibility to integrate disparate software programs into effective workflows, and the ability to share complete workflows with other researchers. In this workshop, expert developers and users of Galaxy for biological MS data analysis will present practical tutorials. Presentations will be aimed at informing both software developers and biologists/analytical chemists on how they can make effective use of the Galaxy framework in their research.
Scheduled speakers:
| Talk | Topic | Speaker | Links |
|---|---|---|---|
| 1. | Short introduction to the workshop | Tim Griffin, University of Minnesota, Minneapolis, MN | |
| 2. | Using the Galaxy Tool Shed to publish software for MS-based data analysis | Ira Cooke, La Trobe University, Australia | |
| 3. | Using installed tools and workflows within GalaxyP | Pratik Jagtap, Center for Mass Spectrometry and Proteomics, St. Paul, MN | |
| 4. | Using Galaxy to generate customized databases for MS-based proteogenomics | Gloria Sheynkman, University of Wisconsin, Madison, WI | |
| 5. | Using Galaxy for advanced multi-omic applications | Jorrit Boekel , Karolinska Institute/Science for Life Laboratory, Sweden | |
| 6. | Concluding questions/discussion |