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Day 1 Pretoria
- Project Introduction
- Introduction to Using Galaxy Basic examples introducing the Galaxy nterface and highlighting a wide range of Galaxy's functionality.
- Next Generation Sequencing (NGS) Data Quality Control Options for evaluating quality, trimming data, and tradeoffs involved.
- RNA-Seq Analysis Example, Part I Read Mapping and Transcript Prediction using the Tuxedo Suite of Tools
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Day 2 Pretoria
- RNA-Seq Analysis Example, Part II Differential Expression Analysis with the Tuxedo Suite of Tools
- RNA-Seq Analysis Example, Part III
RNA-Seq Analysis with a different set of tools
Evaluate and discuss alternatives and selecting different approaches for different situations. - SNP and Variant Calling, Part I
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Day 3 Pretoria
- SNP and Variant Calling, Part II
- ChIP-Seq Analysis
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Day 4 Pretoria
- Genome Assembly
- Install your own Galaxy on Amazon Web Services
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Day 5 Pretoria
- Customizing Galaxy
- Galaxy Tool Shed
- Wrapping your own tools.
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