This page is not intended to be viewed directly. Rather, parts of it are included [here](/events/sao-paulo2014//).
Day 1
9:00 | Intro to Cloud Computing and Using the Nuvem Cloud |
10:20 | Break |
10:40 | Intro to Cloud Computing and Using the Nuvem Cloud (cont.) |
12:00 | Lunch |
2:00 | Galaxy Project Introduction |
2:15 | Introduction to Using Galaxy Basic examples introducing the Galaxy interface and highlighting a wide range of Galaxy's functionality. |
3:20 | Break |
3:40 | Introduction to Using Galaxy (cont.) |
5:00 | Finish |
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Day 2
9:00 | Intro to Using Galaxy (cont.) Workflows and Sharing |
9:50 | Next Generation Sequencing (NGS) Data Quality Control Options for evaluating quality, trimming data, and tradeoffs involved. |
10:20 | Break |
10:40 | Next Generation Sequencing (NGS) Data Quality Control (cont.) |
12:00 | Lunch |
2:00 | Open Discussion and Q and A |
2:15 | ChIP-Seq Analysis |
3:20 | Break |
3:40 | ChIP-Seq Analysis (cont.) |
4:00 | Genome Assembly, Concepts |
5:00 | Finish |
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Day 3
9:00 | Genome Assembly, hands on |
10:40 | Break |
10:40 | RNA-Seq Analysis Example, Part I Read Mapping using the Tuxedo Suite of Tools |
12:00 | Lunch |
2:00 | Open Discussion and Q and A |
2:15 | RNA-Seq Analysis Example, Part II Differential Expression Analysis with the Tuxedo Suite of Tools |
3:20 | Break |
3:40 | RNA-Seq Analysis Example, Part III RNA-Seq Analysis with a different set of tools Evaluate and discuss alternatives and selecting different approaches for different situations. |
5:00 | Finish |
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Day 4
9:00 | SNP and Variant Calling, Part I |
10:20 | Break |
10:40 | SNP and Variant Calling, Part II |
12:00 | Lunch |
2:00 | Open Discussion and Q and A |
2:15 | SNP and Variant Calling, Part III |
3:20 | Break |
3:40 | SNP and Variant Calling, Part IV |
5:00 | Finish |
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Day 5
9:00 | Genome Annotation Concepts |
10:20 | Break |
10:40 | Genome Annotation Concepts (cont.) |
11:00 | Command Line Introduction |
12:00 | Lunch |
2:00 | Genome Annotation using MAKER |
3:20 | Break |
3:40 | Genome Annotation using MAKER (cont.) |
4:00 | Galaxy and CloudMan on Amazon Web Services Intro and Demo |
4:30 | Wrapup |
5:00 | Finish |
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