Galaxy Custom Visualizations
There are many custom visualizations available for Galaxy which are not part of the Galaxy core package. Here, we provide an overview for such visualizations.
Resource | Domain | Owners | Formats | Description |
---|---|---|---|---|
DeepTools | NGS, QC, Normalization, Visualization | Max-Planck-Institut für Immunbiologie und Epigenetik | BAM, bigWig, BED | User-friendly tools for the normalization and visualization of deep-sequencing data |
MetaPhlAn | NGS, Visualization | Harvard School of Public Health | Sequence file (.fasta, .fastq, .tar.bz2 etc.) | A computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. |
VideoViz | Imaging, Microscopy, other Video Data | Center for Phage Technology | Mp4 | This visualization provides support for video playback inside galaxy. It is part of a push to add more tools, formats, and converters to support imaging data. |
LEfSe | NGS, Visualization | Harvard School of Public Health | Microbial abundance tables with two meta rows | Determines the features (organisms, clades etc.) most likely to explain differences between classes by coupling standard tests for statistical significance. |